David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

212-263-2216

Academic office

430 East 29th Street, Alexandria Building East

5th Floor, Room 507

New York, NY 10016

Lab Website
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Professor, Department of Biochemistry and Molecular Pharmacology

Co-Director, Bioinformatics Collaborative Core

Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

PhD from Uppsala University

Huang, Kuan-Lin; Li, Shunqiang; Mertins, Philipp; Cao, Song; Gunawardena, Harsha P; Ruggles, Kelly V; Mani, D R; Clauser, Karl R; Tanioka, Maki; Usary, Jerry; Kavuri, Shyam M; Xie, Ling; Yoon, Christopher; Qiao, Jana W; Wrobel, John; Wyczalkowski, Matthew A; Erdmann-Gilmore, Petra; Snider, Jacqueline E; Hoog, Jeremy; Singh, Purba; Niu, Beifung; Guo, Zhanfang; Sun, Sam Qiancheng; Sanati, Souzan; Kawaler, Emily; Wang, Xuya; Scott, Adam; Ye, Kai; McLellan, Michael D; Wendl, Michael C; Malovannaya, Anna; Held, Jason M; Gillette, Michael A; Fenyo, David; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Davies, Sherri R; Perou, Charles M; Ma, Cynthia; Reid Townsend, R; Chen, Xian; Carr, Steven A; Ellis, Matthew J; Ding, Li

Nature communications. 2017 Mar 28; 8:14864-14864

Mitchell, Leslie A; Wang, Ann; Stracquadanio, Giovanni; Kuang, Zheng; Wang, Xuya; Yang, Kun; Richardson, Sarah; Martin, J Andrew; Zhao, Yu; Walker, Roy; Luo, Yisha; Dai, Hongjiu; Dong, Kang; Tang, Zuojian; Yang, Yanling; Cai, Yizhi; Heguy, Adriana; Ueberheide, Beatrix; Fenyo, David; Dai, Junbiao; Bader, Joel S; Boeke, Jef D

Science. 2017 Mar 10; 355(6329):?-?

Agmon, Neta; Tang, Zuojian; Yang, Kun; Sutter, Ben; Ikushima, Shigehito; Cai, Yizhi; Caravelli, Katrina; Martin, James A; Sun, Xiaoji; Choi, Woo Jin; Zhang, Allen; Stracquadanio, Giovanni; Hao, Haiping; Tu, Benjamin P; Fenyo, David; Bader, Joel S; Boeke, Jef D

Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2017 Feb 7; 114(8):E1470-E1479

Tang, Zuojian; Steranka, Jared P; Ma, Sisi; Grivainis, Mark; Rodic, Nemanja; Huang, Cheng Ran Lisa; Shih, Ie-Ming; Wang, Tian-Li; Boeke, Jef D; Fenyo, David; Burns, Kathleen H

Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2017 Jan 17; 114(5):E733-E740

A systems biology approach identifies FUT8 as a novel driver of melanoma metastasis [Meeting Abstract]

Agrawal, Praveen; Fontanals, Barbara; Sokolova, Elena; Jacob, Samson; Vaiana, Christopher A; McDermott, Meagan; Argibay, Diana; Darvishian, Farbod; Castillo, Mireia; Ueberheide, Beatrix; Osman, Iman; Fenyo, David; Mahal, Lara K; Hernando, Eva

Glycobiology. 2016 Dec; 26(12):1447-1448

Achanta, P; Steranka, J P; Tang, Z; Rodic, N; Sharma, R; Yang, W R; Ma, S; Grivainis, M; Huang, C R L; Schneider, A M; Gallia, G L; Riggins, G J; Quinones-Hinojosa, A; Fenyo, D; Boeke, J D; Burns, K H

Mobile DNA. 2016 Nov 11; 7(1):1-9

Dankert, John F; Rona, Gergely; Clijsters, Linda; Geter, Phillip; Skaar, Jeffrey R; Bermudez-Hernandez, Keria; Sassani, Elizabeth; Fenyo, David; Ueberheide, Beatrix; Schneider, Robert; Pagano, Michele

Molecular cell. 2016 Nov 03; 64(3):507-519

Askenazi, Manor; Fenyo, David

Proteomics. 2016 Sep; 16(18):2495-2501