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David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

917-754-6066

Academic office

435 E 30th St

9th Floor, Room 907

New York, NY 10016

Lab Website
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Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

PhD from Uppsala University

Rockefeller University, Chait Lab

Yang, Mi; Petralia, Francesca; Li, Zhi; Li, Hongyang; Ma, Weiping; Song, Xiaoyu; Kim, Sunkyu; Lee, Heewon; Yu, Han; Lee, Bora; Bae, Seohui; Heo, Eunji; Kaczmarczyk, Jan; Stępniak, Piotr; Warchoł, Michał; Yu, Thomas; Calinawan, Anna P; Boutros, Paul C; Payne, Samuel H; Reva, Boris; Boja, Emily; Rodriguez, Henry; Stolovitzky, Gustavo; Guan, Yuanfang; Kang, Jaewoo; Wang, Pei; Fenyö, David; Saez-Rodriguez, Julio

Cell systems. 2020 Aug 26; 11(2):186-195.e9

McRae, Michael P; Dapkins, Isaac P; Sharif, Iman; Anderson, Judd; Fenyo, David; Sinokrot, Odai; Kang, Stella K; Christodoulides, Nicolaos J; Vurmaz, Deniz; Simmons, Glennon W; Alcorn, Timothy M; Daoura, Marco J; Gisburne, Stu; Zar, David; McDevitt, John T

Journal of medical Internet research. 2020 Aug 24; 22(8):e22033

Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüş, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan, Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A

Cell. 2020 Jul 09; 182(1):200-225.e35

McRae, Michael P; Simmons, Glennon W; Christodoulides, Nicolaos J; Lu, Zhibing; Kang, Stella K; Fenyo, David; Alcorn, Timothy; Dapkins, Isaac P; Sharif, Iman; Vurmaz, Deniz; Modak, Sayli S; Srinivasan, Kritika; Warhadpande, Shruti; Shrivastav, Ravi; McDevitt, John T

Lab on a chip. 2020 Jun 21; 20(12):2075-2085

Devlin, Joseph C; Zwack, Erin E; Tang, Mei San; Li, Zhi; Fenyo, David; Torres, Victor J; Ruggles, Kelly V; Loke, P'ng

Journal of immunology (1950). 2020 Jun 15; 204(12):3389-3399

Grivainis, Mark; Tang, Zuojian; Fenyö, David

Bioinformatics. 2020 Jun 01; 36(12):3877-3878

McRae, Michael P; Simmons, Glennon W; Christodoulides, Nicolaos J; Lu, Zhibing; Kang, Stella K; Fenyo, David; Alcorn, Timothy; Dapkins, Isaac P; Sharif, Iman; Vurmaz, Deniz; Modak, Sayli S; Srinivasan, Kritika; Warhadpande, Shruti; Shrivastav, Ravi; McDevitt, John T

medRxiv : the preprint server for health sciences. 2020 Apr 22;

McKerrow, Wilson; Tang, Zuojian; Steranka, Jared P; Payer, Lindsay M; Boeke, Jef D; Keefe, David; Fenyö, David; Burns, Kathleen H; Liu, Chunhong

Philosophical transactions of the Royal Society of London. Series B. Biological sciences. 2020 Mar 30; 375(1795):20190335