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David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

917-754-6066

Academic office

435 E 30th St

9th Floor, Room 907

New York, NY 10016

Lab Website
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Professor, Department of Biochemistry and Molecular Pharmacology

Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

PhD from Uppsala University

Rockefeller University, Chait Lab

Agmon, Neta; Temple, Jasmine; Tang, Zuojian; Schraink, Tobias; Baron, Maayan; Chen, Jun; Mita, Paolo; Martin, James A; Tu, Benjamin P; Yanai, Itai; Fenyö, David; Boeke, Jef D

Nucleic acids research. 2020 Jan 10; 48(1):486-499

Betancourt, Lazaro Hiram; Szasz, A Marcell; Kuras, Magdalena; Rodriguez Murillo, Jimmy; Sugihara, Yutaka; Pla, Indira; Horvath, Zsolt; Pawłowski, Krzysztof; Rezeli, Melinda; Miharada, Kenichi; Gil, Jeovanis; Eriksson, Jonatan; Appelqvist, Roger; Miliotis, Tasso; Baldetorp, Bo; Ingvar, Christian; Olsson, Håkan; Lundgren, Lotta; Horvatovich, Peter; Welinder, Charlotte; Wieslander, Elisabet; Kwon, Ho Jeong; Malm, Johan; Nemeth, Istvan Balazs; Jönsson, Göran; Fenyö, David; Sanchez, Aniel; Marko-Varga, György

Cancers. 2019 Dec 09; 11(12):

Adney, Emily M; Ochmann, Matthias T; Sil, Srinjoy; Truong, David M; Mita, Paolo; Wang, Xuya; Kahler, David J; Fenyö, David; Holt, Liam J; Boeke, Jef D

Genetics. 2019 Dec; 213(4):1401-1414

Clark, David J; Dhanasekaran, Saravana M; Petralia, Francesca; Pan, Jianbo; Song, Xiaoyu; Hu, Yingwei; da Veiga Leprevost, Felipe; Reva, Boris; Lih, Tung-Shing M; Chang, Hui-Yin; Ma, Weiping; Huang, Chen; Ricketts, Christopher J; Chen, Lijun; Krek, Azra; Li, Yize; Rykunov, Dmitry; Li, Qing Kay; Chen, Lin S; Ozbek, Umut; Vasaikar, Suhas; Wu, Yige; Yoo, Seungyeul; Chowdhury, Shrabanti; Wyczalkowski, Matthew A; Ji, Jiayi; Schnaubelt, Michael; Kong, Andy; Sethuraman, Sunantha; Avtonomov, Dmitry M; Ao, Minghui; Colaprico, Antonio; Cao, Song; Cho, Kyung-Cho; Kalayci, Selim; Ma, Shiyong; Liu, Wenke; Ruggles, Kelly; Calinawan, Anna; Gümüş, Zeynep H; Geizler, Daniel; Kawaler, Emily; Teo, Guo Ci; Wen, Bo; Zhang, Yuping; Keegan, Sarah; Li, Kai; Chen, Feng; Edwards, Nathan; Pierorazio, Phillip M; Chen, Xi Steven; Pavlovich, Christian P; Hakimi, A Ari; Brominski, Gabriel; Hsieh, James J; Antczak, Andrzej; Omelchenko, Tatiana; Lubinski, Jan; Wiznerowicz, Maciej; Linehan, W Marston; Kinsinger, Christopher R; Thiagarajan, Mathangi; Boja, Emily S; Mesri, Mehdi; Hiltke, Tara; Robles, Ana I; Rodriguez, Henry; Qian, Jiang; Fenyö, David; Zhang, Bing; Ding, Li; Schadt, Eric; Chinnaiyan, Arul M; Zhang, Zhen; Omenn, Gilbert S; Cieslik, Marcin; Chan, Daniel W; Nesvizhskii, Alexey I; Wang, Pei; Zhang, Hui

Cell. 2019 Oct 31; 179(4):964-983.e31

McKerrow, Wilson; Fenyö, David

Bioinformatics. 2019 Oct 04;

Wu, Pamela; Heins, Zachary J; Muller, James; Katsnelson, Lizabeth; de Bruijn, Ino; Abeshouse, Adam A; Schultz, Nikolaus; Fenyö, David; Gao, Jianjiong

Molecular & cellular proteomics. 2019 Sep; 18(9):1893-1898

Liu, Wenke; Payne, Samuel H; Ma, Sisi; Fenyö, David

Molecular & cellular proteomics. 2019 Aug 09; 18(8 suppl 1):S169-S182

Huang, Kuan-Lin; Wu, Yige; Primeau, Tina; Wang, Yi-Ting; Gao, Yuqian; McMichael, Joshua F; Scott, Adam D; Cao, Song; Wendl, Michael C; Johnson, Kimberly J; Ruggles, Kelly; Held, Jason; Payne, Samuel H; Davies, Sherri R; Dar, Arvin; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Ellis, Matthew J; Townsend, R Reid; Chen, Feng; Fenyo, David; Li, Shunqiang; Liu, Tao; Carr, Steven A; Ding, Li

Molecular & cellular proteomics. 2019 Aug; 18(8):1630-1650