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David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

917-754-6066

Academic office

435 E 30th St

9th Floor, Room 907

New York, NY 10016

Lab Website
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Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

PhD from Uppsala University

Rockefeller University, Chait Lab

Azzouz, Doua F; Chen, Ze; Izmirly, Peter M; Chen, Lea Ann; Li, Zhi; Zhang, Chongda; Mieles, David; Trujillo, Kate; Heguy, Adriana; Pironti, Alejandro; Putzel, Greg G; Schwudke, Dominik; Fenyo, David; Buyon, Jill P; Alekseyenko, Alexander V; Gisch, Nicolas; Silverman, Gregg J

Annals of the rheumatic diseases. 2023 Oct; 82(10):1315-1327

Chowdhury, Shrabanti; Kennedy, Jacob J; Ivey, Richard G; Murillo, Oscar D; Hosseini, Noshad; Song, Xiaoyu; Petralia, Francesca; Calinawan, Anna; Savage, Sara R; Berry, Anna B; Reva, Boris; Ozbek, Umut; Krek, Azra; Ma, Weiping; da Veiga Leprevost, Felipe; Ji, Jiayi; Yoo, Seungyeul; Lin, Chenwei; Voytovich, Uliana J; Huang, Yajue; Lee, Sun-Hee; Bergan, Lindsay; Lorentzen, Travis D; Mesri, Mehdi; Rodriguez, Henry; Hoofnagle, Andrew N; Herbert, Zachary T; Nesvizhskii, Alexey I; Zhang, Bing; Whiteaker, Jeffrey R; Fenyo, David; McKerrow, Wilson; Wang, Joshua; Schürer, Stephan C; Stathias, Vasileios; Chen, X Steven; Barcellos-Hoff, Mary Helen; Starr, Timothy K; Winterhoff, Boris J; Nelson, Andrew C; Mok, Samuel C; Kaufmann, Scott H; Drescher, Charles; Cieslik, Marcin; Wang, Pei; Birrer, Michael J; Paulovich, Amanda G

Cell. 2023 Aug 03; 186(16):3476-3498.e35

Berteli, Thalita S; Wang, Fang; McKerrow, Wilson; Navarro, Paula A; Fenyo, David; Boeke, Jef D; Kohlrausch, Fabiana B; Keefe, David L

Journal of assisted reproduction & genetics. 2023 Aug; 40(8):1835-1843

Frenster, Joshua D; Erdjument-Bromage, Hediye; Stephan, Gabriele; Ravn-Boess, Niklas; Wang, Shuai; Liu, Wenke; Bready, Devin; Wilcox, Jordan; Kieslich, Björn; Jankovic, Manuel; Wilde, Caroline; Horn, Susanne; Sträter, Norbert; Liebscher, Ines; Schöneberg, Torsten; Fenyo, David; Neubert, Thomas A; Placantonakis, Dimitris G

Cell reports. 2023 Jun 23; 42(7):112679

Deng, Jiehui; Peng, David H; Fenyo, David; Yuan, Hao; Lopez, Alfonso; Levin, Daniel S; Meynardie, Mary; Quinteros, Mari; Ranieri, Michela; Sahu, Soumyadip; Lau, Sally C M; Shum, Elaine; Velcheti, Vamsidhar; Punekar, Salman R; Rekhtman, Natasha; Dowling, Catríona M; Weerasekara, Vajira; Xue, Yun; Ji, Hongbin; Siu, Yik; Jones, Drew; Hata, Aaron N; Shimamura, Takeshi; Poirier, John T; Rudin, Charles M; Hattori, Takamitsu; Koide, Shohei; Papagiannakopoulos, Thales; Neel, Benjamin G; Bardeesy, Nabeel; Wong, Kwok-Kin

bioRxiv.org : the preprint server for biology. 2023 Apr 20;

Zhao, Calvin C; Bjurlin, Marc A; Wysock, James S; Taneja, Samir S; Huang, William C; Fenyo, David; Matulewicz, Richard S

Urologic oncology. 2022 Oct; 40(10):453.e9-453.e18

Cheng, Pan; Zhao, Xin; Katsnelson, Lizabeth; Camacho-Hernandez, Elaine M; Mermerian, Angela; Mays, Joseph C; Lippman, Scott M; Rosales-Alvarez, Reyna Edith; Moya, Raquel; Shwetar, Jasmine; Grun, Dominic; Fenyo, David; Davoli, Teresa

eLife. 2022 Sep 21; 11:

Johannet, Paul; Liu, Wenke; Fenyo, David; Wind-Rotolo, Megan; Krogsgaard, Michelle; Mehnert, Janice M; Weber, Jeffrey S; Zhong, Judy; Osman, Iman

Clinical cancer research. 2022 09 15; 28(18):4121-4130