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David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

917-754-6066

Academic office

435 E 30th St

9th Floor, Room 907

New York, NY 10016

Lab Website
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Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

PhD from Uppsala University

Rockefeller University, Chait Lab

Hong, Runyu; Liu, Wenke; DeLair, Deborah; Razavian, Narges; Fenyo, David

Cell reports. Medicine. 2021 Sep 21; 2(<prism:issueIdentifier>9):?-?

Castro, Cristina M; Corciulo, Carmen; Friedman, Benjamin; Li, Zhi; Jacob, Samson; Fenyo, David; Cronstein, Bruce N

Purinergic signalling. 2021 Sep; 17(3):439-448

Wang, Joshua M; Liu, Wenke; Chen, Xiaoshan; McRae, Michael P; McDevitt, John T; Fenyo, David

Journal of medical Internet research. 2021 Jul 09; 23(7):e29514

Huang, Kuan-Lin; Scott, Adam D; Zhou, Daniel Cui; Wang, Liang-Bo; Weerasinghe, Amila; Elmas, Abdulkadir; Liu, Ruiyang; Wu, Yige; Wendl, Michael C; Wyczalkowski, Matthew A; Baral, Jessika; Sengupta, Sohini; Lai, Chin-Wen; Ruggles, Kelly; Payne, Samuel H; Raphael, Benjamin; Fenyö, David; Chen, Ken; Mills, Gordon; Ding, Li

Nature communications. 2021 Apr 19; 12(1):2313

Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A; Kyle, Jennifer E; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C; Caravan, Wagma; Liu, Wenke; Cui Zhou, Daniel; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A; Moon, Jamie; Ma, Weiping; Chu, Rosalie K; Weitz, Karl K; Moore, Ronald J; Monroe, Matthew E; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A; McMichael, Joshua F; Henderson, Brittany L; Lindgren, Caleb M; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G; Bramer, Lisa M; Zink, Erika; Couvillion, Sneha P; Bloodsworth, Kent J; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M; Schürer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A; Boja, Emily S; Kinsinger, Christopher R; Robles, Ana I; Hiltke, Tara; Thiagarajan, Mathangi; Nesvizhskii, Alexey I; Zhang, Bing; Mani, D R; Ceccarelli, Michele; Chen, Xi S; Cottingham, Sandra L; Li, Qing Kay; Kim, Albert H; Fenyö, David; Ruggles, Kelly V; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H; Resnick, Adam C; Wang, Pei; Smith, Richard D; Iavarone, Antonio; Chheda, Milan G; Barnholtz-Sloan, Jill S; Rodland, Karin D; Liu, Tao; Ding, Li

Cancer cell. 2021 Apr 12; 39(4):509-528.e20

Mast, Fred D; Fridy, Peter C; Ketaren, Natalia E; Wang, Junjie; Jacobs, Erica Y; Olivier, Jean Paul; Sanyal, Tanmoy; Molloy, Kelly R; Schmidt, Fabian; Rutkowska, Magda; Weisblum, Yiska; Rich, Lucille M; Vanderwall, Elizabeth R; Dambrauskas, Nicolas; Vigdorovich, Vladimir; Keegan, Sarah; Jiler, Jacob B; Stein, Milana E; Olinares, Paul Dominic B; Hatziioannou, Theodora; Sather, D Noah; Debley, Jason S; Fenyö, David; Sali, Andrej; Bieniasz, Paul D; Aitchison, John D; Chait, Brian T; Rout, Michael P

bioRxiv.org : the preprint server for biology. 2021 Apr 10;

Cifani, Paolo; Li, Zhi; Luo, Danmeng; Grivainis, Mark; Intlekofer, Andrew M; Fenyö, David; Kentsis, Alex

Journal of proteome research. 2021 Apr 02; 20(4):1835-1848

Simoneschi, Daniele; Rona, Gergely; Zhou, Nan; Jeong, Yeon-Tae; Jiang, Shaowen; Milletti, Giacomo; Arbini, Arnaldo A; O'Sullivan, Alfie; Wang, Andrew A; Nithikasem, Sorasicha; Keegan, Sarah; Siu, Yik; Cianfanelli, Valentina; Maiani, Emiliano; Nazio, Francesca; Cecconi, Francesco; Boccalatte, Francesco; Fenyö, David; Jones, Drew R; Busino, Luca; Pagano, Michele

Nature. 2021 Apr; 592(7856):789-793