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David Fenyo

David Fenyo, PhD

Institute for Systems Genetics

Professor, Department of Biochemistry and Molecular Pharmacology

Keywords
biostatistics, cancer, computational biology, genomics, imaging, pharmacology, proteomics, systems biology
Summary

Our goal is detailed understanding of the dynamics of cellular processes, and we apply mathematical, statistical and computational methods to solve practical problems in experimental design optimization, quantitative data analysis, and in the modeling of biological systems for generating new hypotheses. The focus of our research is proteomic data analysis: we are developing computational methods and databases for protein identification, characterization and quantitation using mass spectrometry-based proteomics.

Phone

917-754-6066

Academic office

435 E 30th St

9th Floor, Room 907

New York, NY 10016

Lab Website
Fenyo Lab
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Positions

Professor, Department of Biochemistry and Molecular Pharmacology at NYU Grossman School of Medicine

Director, Biomedical Informatics Masters Training Program

Director, Systems and Computational Biomedicine PhD Training Program

Graduate Education

PhD from Uppsala University

Postdoctoral Training

Rockefeller University, Chait Lab

Predicting endometrial cancer subtypes and molecular features from histopathology images using multi-resolution deep learning models

Hong, Runyu; Liu, Wenke; DeLair, Deborah; Razavian, Narges; Fenyo, David

Cell reports. Medicine. 2021 Sep 21; 2(<prism:issueIdentifier>9):?-?

Adenosine A2A receptor null chondrocyte transcriptome resembles that of human osteoarthritic chondrocytes

Castro, Cristina M; Corciulo, Carmen; Friedman, Benjamin; Li, Zhi; Jacob, Samson; Fenyo, David; Cronstein, Bruce N

Purinergic signalling. 2021 Sep; 17(3):439-448

Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications

Wang, Joshua M; Liu, Wenke; Chen, Xiaoshan; McRae, Michael P; McDevitt, John T; Fenyo, David

Journal of medical Internet research. 2021 Jul 09; 23(7):e29514

Spatially interacting phosphorylation sites and mutations in cancer

Huang, Kuan-Lin; Scott, Adam D; Zhou, Daniel Cui; Wang, Liang-Bo; Weerasinghe, Amila; Elmas, Abdulkadir; Liu, Ruiyang; Wu, Yige; Wendl, Michael C; Wyczalkowski, Matthew A; Baral, Jessika; Sengupta, Sohini; Lai, Chin-Wen; Ruggles, Kelly; Payne, Samuel H; Raphael, Benjamin; Fenyö, David; Chen, Ken; Mills, Gordon; Ding, Li

Nature communications. 2021 Apr 19; 12(1):2313

Proteogenomic and metabolomic characterization of human glioblastoma

Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A; Kyle, Jennifer E; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C; Caravan, Wagma; Liu, Wenke; Cui Zhou, Daniel; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A; Moon, Jamie; Ma, Weiping; Chu, Rosalie K; Weitz, Karl K; Moore, Ronald J; Monroe, Matthew E; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A; McMichael, Joshua F; Henderson, Brittany L; Lindgren, Caleb M; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G; Bramer, Lisa M; Zink, Erika; Couvillion, Sneha P; Bloodsworth, Kent J; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M; Schürer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A; Boja, Emily S; Kinsinger, Christopher R; Robles, Ana I; Hiltke, Tara; Thiagarajan, Mathangi; Nesvizhskii, Alexey I; Zhang, Bing; Mani, D R; Ceccarelli, Michele; Chen, Xi S; Cottingham, Sandra L; Li, Qing Kay; Kim, Albert H; Fenyö, David; Ruggles, Kelly V; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H; Resnick, Adam C; Wang, Pei; Smith, Richard D; Iavarone, Antonio; Chheda, Milan G; Barnholtz-Sloan, Jill S; Rodland, Karin D; Liu, Tao; Ding, Li

Cancer cell. 2021 Apr 12; 39(4):509-528.e20

Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2

Mast, Fred D; Fridy, Peter C; Ketaren, Natalia E; Wang, Junjie; Jacobs, Erica Y; Olivier, Jean Paul; Sanyal, Tanmoy; Molloy, Kelly R; Schmidt, Fabian; Rutkowska, Magda; Weisblum, Yiska; Rich, Lucille M; Vanderwall, Elizabeth R; Dambrauskas, Nicolas; Vigdorovich, Vladimir; Keegan, Sarah; Jiler, Jacob B; Stein, Milana E; Olinares, Paul Dominic B; Hatziioannou, Theodora; Sather, D Noah; Debley, Jason S; Fenyö, David; Sali, Andrej; Bieniasz, Paul D; Aitchison, John D; Chait, Brian T; Rout, Michael P

bioRxiv.org : the preprint server for biology. 2021 Apr 10;

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics

Cifani, Paolo; Li, Zhi; Luo, Danmeng; Grivainis, Mark; Intlekofer, Andrew M; Fenyö, David; Kentsis, Alex

Journal of proteome research. 2021 Apr 02; 20(4):1835-1848

CRL4AMBRA1 is a master regulator of D-type cyclins

Simoneschi, Daniele; Rona, Gergely; Zhou, Nan; Jeong, Yeon-Tae; Jiang, Shaowen; Milletti, Giacomo; Arbini, Arnaldo A; O'Sullivan, Alfie; Wang, Andrew A; Nithikasem, Sorasicha; Keegan, Sarah; Siu, Yik; Cianfanelli, Valentina; Maiani, Emiliano; Nazio, Francesca; Cecconi, Francesco; Boccalatte, Francesco; Fenyö, David; Jones, Drew R; Busino, Luca; Pagano, Michele

Nature. 2021 Apr; 592(7856):789-793

See All Publications (229)

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