Huilin Li

Huilin Li, PhD

Professor, Department of Population Health

Keywords
Biostatistics, High Dimensional Data analysis, Genomic, metagenomics, metabolomic, proteomic, Mult-omics Data Integration, Study design, Host-microbe interaction study
Summary

My central research focus is to develop and apply innovative statistical methods to solve challenging data analysis problems in three biomedical research areas: 1) high-throughput metagenomics/microbiome/genetics data analysis, 2) complex survey methodology, and 3) biomedical collaborative research. 

I am the director of Metagenomic/Microbiomic Data Analysis Group in Department of Population health. With NIH’s support, my research group has been focused on developing novel statistical methods in analyzing metagenomics and microbiome data, including microbiome association test, longitudinal microbiome data analysis, and microbiome causal/mediation modeling.  We work closely with various NYULMC research labs to ensure that the latest statistical methods are incorporated for optimal experimental design and downstream data analysis. We develop best practice data analysis pipelines for a variety of experimental designs that integrate proprietary software from the existing microbiome data analysis platform and the best Open Source tools, as well as software developed within our group.

Link to Li Lab

 

Phone

646-501-3651

Academic office

180 Madison Avenue, RM 413

Fourth Floor

New York, NY 10016

Lab Website
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Director, Molecular and Multi-omics Data Analysis Core

Director, NYU Biostatistics Resource

PhD from University of Maryland

National Cancer Institute, Biostatistics Branch, Division of Cancer Epidemiology and Genetics

Zaidan, Nadim; Jaber, Karim; Ho, Melody; Zhou, Boyan; Pei, Zhiheng; Bui, Michelle L; Cardozo, Lila; Merritts, Kyle; Mishra, Rashmi; Xiong, Xiaozhong; Kim, Yeji; Wu, Ming; Knight, John; Fargue, Sonia; Li, Huilin; Nazzal, Lama

Gut microbes. 2026 Dec 31; 18(1):2725367

Xu, Zhijing; Hu, Jinyu; Luo, Huabin; Qi, Xiang; Liu, Ruotong; Liu, Yunrui; Zheng, Yaguang; Li, Huilin; Wu, Bei

Annals of medicine (Helsinki). 2026 Dec; 58(1):2614826

Ahn, Jiyoung; Halloran, Zelle; Beggs, Dia B; Wu, Feng; Duan, Yuxi; Hwang, Hanah; Zhu, Ziying; Flores, Vicente; Albergamo, Vittorio; Kwak, Soyoung; Kim, Sara; Mei, Steve; Đoàn, Lan N; Yi, Stella S; Li, Huilin; Hayes, Richard B

Cancer epidemiology biomarkers & prevention. 2026 Jun 29;

Usyk, Mykhaylo; Hayes, Richard B; Knight, Rob; Gonzalez, Antonio; Li, Huilin; Osman, Iman; Weber, Jeffrey S; Ahn, Jiyoung

Cell. 2026 Jun 25; 189(13):3940-3949.e14

Jiang, Nan; Liu, Jing; Song, Haili; Zhao, Yanan; Li, Huilin; Yi, Stella S; Beasley, Jeannette M; Hu, Lu

JMIR diabetes. 2026 Jun 03; 11:e95295

Zhao, Yanan; Lee, Ting-Fang; Zhou, Boyan; Wang, Chan; Schmidt, Ann Marie; Liu, Mengling; Li, Huilin; Hu, Jiyuan

Bioinformatics. 2026 Feb 28; 42(3):

Berube, Lauren T; Wang, Chan; Curran, Margaret; Pompeii, Mary Lou; Hu, Lu; Barua, Souptik; Li, Huilin; St-Jules, David E; Schoenthaler, Antoinette; Segal, Eran; Bergman, Michael; Popp, Collin J

Journal of nutrition. 2026 Jan 13; 101364

Hu, Lu; Liu, Jing; Yang, Ximin; Teng, Crystal; Li, Huilin; Zhao, Yanan; Levy, Natalie; Zhu, Kelly; Vang, Suzanne; Kwon, Simona C; Feldman, Naumi; Lau, Jennifer; Jiang, Yanping; Trinh-Shevrin, Chau; Islam, Nadia

PLoS one. 2026; 21(2):e0341217