Huilin Li

Huilin Li, PhD

Professor, Department of Population Health

Keywords
Biostatistics, High Dimensional Data analysis, Genomic, metagenomics, metabolomic, proteomic, Mult-omics Data Integration, Study design, Host-microbe interaction study
Summary

My central research focus is to develop and apply innovative statistical methods to solve challenging data analysis problems in three biomedical research areas: 1) high-throughput metagenomics/microbiome/genetics data analysis, 2) complex survey methodology, and 3) biomedical collaborative research. 

I am the director of Metagenomic/Microbiomic Data Analysis Group in Department of Population health. With NIH’s support, my research group has been focused on developing novel statistical methods in analyzing metagenomics and microbiome data, including microbiome association test, longitudinal microbiome data analysis, and microbiome causal/mediation modeling.  We work closely with various NYULMC research labs to ensure that the latest statistical methods are incorporated for optimal experimental design and downstream data analysis. We develop best practice data analysis pipelines for a variety of experimental designs that integrate proprietary software from the existing microbiome data analysis platform and the best Open Source tools, as well as software developed within our group.

Link to Li Lab

 

Phone

646-501-3651

Academic office

180 Madison Avenue, RM 413

Fourth Floor

New York, NY 10016

Lab Website
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Director, Molecular and Multi-omics Data Analysis Core

Director, NYU Biostatistics Resource

PhD from University of Maryland

National Cancer Institute, Biostatistics Branch, Division of Cancer Epidemiology and Genetics

Meng, Yixuan; Wang, Chan; Usyk, Mykhaylo; Kwak, Soyoung; Peng, Chengwei; Hu, Kenneth S; Oberstein, Paul E; Krogsgaard, Michelle; Li, Huilin; Hayes, Richard B; Ahn, Jiyoung

mSystems. 2025 Feb 27; e0122924

Shi, Yun; Sevick, Mary Ann; Tang, Hao; Wang, Chan; Zhao, Yanan; Yoon, SeongHoon; Li, Huilin; Jiang, Yulin; Bai, Yujie; Ong, Iris H; Yang, Ximin; Su, Liwen; Levy, Natalie; Tamura, Kosuke; Hu, Lu

Journal of general internal medicine. 2025 Feb 27;

Arivazhagan, Lakshmi; Delbare, Sofie; Wilson, Robin A; Manigrasso, Michaele B; Zhou, Boyan; Ruiz, Henry H; Mangar, Kaamashri; Higa, Ryoko; Brown, Emily; Li, Huilin; Garabedian, Michael J; Ramasamy, Ravichandran; Moore, Kathryn J; Fisher, Edward A; Theise, Neil D; Schmidt, Ann Marie

JJHEP reports : innovation in hepatology. 2025 Feb; 7(2):101222

Hu, Lu; Lin, Nelson F; Shi, Yun; Cao, Jiepin; Sevick, Mary Ann; Li, Huilin; Beasley, Jeannette M; Levy, Natalie; Tamura, Kosuke; Xu, Xinyi; Jiang, Yulin; Ong, Iris; Yang, Ximin; Bai, Yujie; Su, Liwen; Chan, Sze Wan; Yi, Stella S

JMIR research protocols. 2024 Nov 19; 13:e65455

Kwak, Soyoung; Wang, Chan; Usyk, Mykhaylo; Wu, Feng; Freedman, Neal D; Huang, Wen-Yi; McCullough, Marjorie L; Um, Caroline Y; Shrubsole, Martha J; Cai, Qiuyin; Li, Huilin; Ahn, Jiyoung; Hayes, Richard B

JAMA oncology. 2024 Nov 01; 10(11):1537-1547

Tsay, Jun-Chieh J; Darawshy, Fares; Wang, Chan; Kwok, Benjamin; Wong, Kendrew K; Wu, Benjamin G; Sulaiman, Imran; Zhou, Hua; Isaacs, Bradley; Kugler, Matthias C; Sanchez, Elizabeth; Bain, Alexander; Li, Yonghua; Schluger, Rosemary; Lukovnikova, Alena; Collazo, Destiny; Kyeremateng, Yaa; Pillai, Ray; Chang, Miao; Li, Qingsheng; Vanguri, Rami S; Becker, Anton S; Moore, William H; Thurston, George; Gordon, Terry; Moreira, Andre L; Goparaju, Chandra M; Sterman, Daniel H; Tsirigos, Aristotelis; Li, Huilin; Segal, Leopoldo N; Pass, Harvey I

Cancer epidemiology biomarkers & prevention. 2024 Nov 01; 33(11):1433-1444

Stevens, Elizabeth R; Thomas, Jerry; Martinez-Lopez, Natalia; Fagerlin, Angela; Ciprut, Shannon; Shedlin, Michele; Gold, Heather T; Li, Huilin; Davis, J Kelly; Campagna, Ada; Bhat, Sandeep; Warren, Rueben; Ubel, Peter; Ravenell, Joseph E; Makarov, Danil V

Journal of immigrant & minority health. 2024 Oct; 26(5):866-877

Zhou, Boyan; Wang, Chan; Putzel, Gregory; Hu, Jiyuan; Liu, Menghan; Wu, Fen; Chen, Yu; Pironti, Alejandro; Li, Huilin

Microbiology spectrum. 2024 Sep 23; e0143124