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Huilin Li

Huilin Li, PhD

Professor, Department of Population Health

Keywords
Biostatistics, Metagenomics/Microbiomics Data Analysis, Statistical Genomic Methodology, Survey methodology, Study design
Summary

My central research focus is to develop and apply innovative statistical methods to solve challenging data analysis problems in three biomedical research areas: 1) high-throughput metagenomics/microbiome/genetics data analysis, 2) complex survey methodology, and 3) biomedical collaborative research. 

I am the director of Metagenomic/Microbiomic Data Analysis Group in Department of Population health. With NIH’s support, my research group has been focused on developing novel statistical methods in analyzing metagenomics and microbiome data, including microbiome association test, longitudinal microbiome data analysis, and microbiome causal/mediation modeling.  We work closely with various NYULMC research labs to ensure that the latest statistical methods are incorporated for optimal experimental design and downstream data analysis. We develop best practice data analysis pipelines for a variety of experimental designs that integrate proprietary software from the existing microbiome data analysis platform and the best Open Source tools, as well as software developed within our group.

Link to Li Lab

 

Phone

646-501-3651

Academic office

180 Madison Avenue, RM 552

Fifth Floor

New York, NY 10016

Lab Website
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These focus areas and their associated publications are derived from medical subject headings from PubMed.
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Director, Molecular and Multi-omics Data Analysis Core

Director, NYU Biostatistics Resource

PhD from University of Maryland

National Cancer Institute, Biostatistics Branch, Division of Cancer Epidemiology and Genetics

Tsay, Jun-Chieh J; Darawshy, Fares; Wang, Chan; Kwok, Benjamin; Wong, Kendrew K; Wu, Benjamin G; Sulaiman, Imran; Zhou, Hua; Isaacs, Bradley; Kugler, Matthias C; Sanchez, Elizabeth; Bain, Alexander; Li, Yonghua; Schluger, Rosemary; Lukovnikova, Alena; Collazo, Destiny; Kyeremateng, Yaa; Pillai, Ray; Chang, Miao; Li, Qingsheng; Vanguri, Rami S; Becker, Anton S; Moore, William H; Thurston, George; Gordon, Terry; Moreira, Andre L; Goparaju, Chandra M; Sterman, Daniel H; Tsirigos, Aristotelis; Li, Huilin; Segal, Leopoldo N; Pass, Harvey I

Cancer epidemiology biomarkers & prevention. 2024 Sep 03;

Vanegas, Sally M; Curado, Silvia; Gujral, Akash; Valverde, Gabriela; Parraga, Susan; Aleman, Jose O; Reid, Migdalia; Elbel, Brian; Schmidt, Ann Marie; Heffron, Sean P; Segal, Eran; Li, Huilin; Abrams, Courtney; Sevick, Mary A; Popp, Collin; Armijos, Evelyn; Merriwether, Ericka N; Ivezaj, Valentina; Ren-Fielding, Christine; Parikh, Manish; Jay, Melanie

BMJ open. 2024 Aug 24; 14(8):e081201

Berube, Lauren T; Popp, Collin J; Curran, Margaret; Hu, Lu; Pompeii, Mary Lou; Barua, Souptik; Bernstein, Emma; Salcedo, Vanessa; Li, Huilin; St-Jules, David E; Segal, Eran; Bergman, Michael; Williams, Natasha J; Sevick, Mary Ann

Trials. 2024 Jul 25; 25(1):506

Natalini, Jake G; Wong, Kendrew K; Nelson, Nathaniel C; Wu, Benjamin G; Rudym, Darya; Lesko, Melissa B; Qayum, Seema; Lewis, Tyler C; Wong, Adrian; Chang, Stephanie H; Chan, Justin C Y; Geraci, Travis C; Li, Yonghua; Wang, Chan; Li, Huilin; Pamar, Prerna; Schnier, Joseph; Mahoney, Ian J; Malik, Tahir; Darawshy, Fares; Sulaiman, Imran; Kugler, Matthias C; Singh, Rajbir; Collazo, Destiny E; Chang, Miao; Patel, Shrey; Kyeremateng, Yaa; McCormick, Colin; Barnett, Clea R; Tsay, Jun-Chieh J; Brosnahan, Shari B; Singh, Shivani; Pass, Harvey I; Angel, Luis F; Segal, Leopoldo N

American journal of respiratory & critical care medicine. 2024 Jun 15; 209(12):1463-1476

Stevens, Elizabeth R; Thomas, Jerry; Martinez-Lopez, Natalia; Fagerlin, Angela; Ciprut, Shannon; Shedlin, Michele; Gold, Heather T; Li, Huilin; Davis, J Kelly; Campagna, Ada; Bhat, Sandeep; Warren, Rueben; Ubel, Peter; Ravenell, Joseph E; Makarov, Danil V

Journal of immigrant & minority health. 2024 Jun 01;

Zaidan, Nadim; Wang, Chan; Chen, Ze; Lieske, John C; Milliner, Dawn; Seide, Barbara; Ho, Melody; Li, Huilin; Ruggles, Kelly V; Modersitzki, Frank; Goldfarb, David S; Blaser, Martin; Nazzal, Lama

Kidney international reports. 2024 Jun; 9(6):1836-1848

Hsu, Hao-Chi; Wang, Michelle; Kovach, Amanda; Darwin, Andrew J; Li, Huilin

The EMBO journal. 2024 Apr; 43(8):1634-1652

Kwak, Soyoung; Usyk, Mykhaylo; Beggs, Dia; Choi, Heesun; Ahdoot, Dariush; Wu, Feng; Maceda, Lorraine; Li, Huilin; Im, Eun-Ok; Han, Hae-Ra; Lee, Eunjung; Wu, Anna H; Hayes, Richard B; Ahn, Jiyoung

NPJ biofilms and microbiomes. 2024 Mar 11; 10(1):19