Center for Biospecimen Research & Development Featured Publications | NYU Langone Health

Center for Biospecimen Research & Development Center for Biospecimen Research & Development Featured Publications

Center for Biospecimen Research & Development Featured Publications

Our staff members and collaborators frequently publish their research in leading peer-reviewed publications. Here is a selection of their recent accomplishments.

Selected Publications

Genomic and Transcriptomic Profiling of Digital Papillary Adenocarcinomas Reveals Alterations in Matrix Remodeling and Metabolic Genes

Bayraktar, Erol Can; Aung, Phyu P; Gill, Pavandeep; Shen, Guomiao; Vasudevaraja, Varshini; Lai, Zongshan; Chiriboga, Luis; Ivan, Doina; Nagarajan, Priyadharsini; Curry, Jonathan L; Torres-Cabala, Carlos A; Prieto, Victor G; Jour, George

Journal of cutaneous pathology. 2025 Apr ; 52:309-316

Characterizing Chronic Cutaneous Immune-Related Adverse Events Following Immune Checkpoint Inhibitors

Fletcher, Kylie A; Goodman, Rachel S; Lawless, Aleigha; Woodford, Rachel; Fa'ak, Faisal; Tipirneni, Asha; Patrinely, J Randall; Yeoh, Hui Ling; Rapisuwon, Suthee; Haydon, Andrew; Osman, Iman; Mehnert, Janice M; Long, Georgina V; Sullivan, Ryan J; Carlino, Matteo S; Menzies, Alexander M; Dewan, Anna K; Johnson, Douglas B

JAMA dermatology. 2025 Mar 12;

Deep learning-based classifier for carcinoma of unknown primary using methylation quantitative trait loci

Walker, Adam; Fang, Camila S; Schroff, Chanel; Serrano, Jonathan; Vasudevaraja, Varshini; Yang, Yiying; Belakhoua, Sarra; Faustin, Arline; William, Christopher M; Zagzag, David; Chiang, Sarah; Acosta, Andres Martin; Movahed-Ezazi, Misha; Park, Kyung; Moreira, Andre L; Darvishian, Farbod; Galbraith, Kristyn; Snuderl, Matija

Journal of neuropathology & experimental neurology. 2025 Feb 01; 84:147-154

Deep learning uncovers histological patterns of YAP1/TEAD activity related to disease aggressiveness in cancer patients

Schmauch, Benoit; Cabeli, Vincent; Domingues, Omar Darwiche; Le Douget, Jean-Eudes; Hardy, Alexandra; Belbahri, Reda; Maussion, Charles; Romagnoni, Alberto; Eckstein, Markus; Fuchs, Florian; Swalduz, Aurélie; Lantuejoul, Sylvie; Crochet, Hugo; Ghiringhelli, François; Derangere, Valentin; Truntzer, Caroline; Pass, Harvey; Moreira, Andre L; Chiriboga, Luis; Zheng, Yuanning; Ozawa, Michael; Howitt, Brooke E; Gevaert, Olivier; Girard, Nicolas; Rexhepaj, Elton; Valtingojer, Iris; Debussche, Laurent; de Rinaldis, Emanuele; Nestle, Frank; Spanakis, Emmanuel; Fantin, Valeria R; Durand, Eric Y; Classe, Marion; Von Loga, Katharina; Pronier, Elodie; Cesaroni, Matteo

iScience. 2025 Jan 17; 28:111638

Chromothripsis-Mediated Small Cell Lung Carcinoma

Rekhtman, Natasha; Tischfield, Sam E; Febres-Aldana, Christopher A; Lee, Jake June-Koo; Chang, Jason C; Herzberg, Benjamin O; Selenica, Pier; Woo, Hyung Jun; Vanderbilt, Chad M; Yang, Soo-Ryum; Xu, Fei; Bowman, Anita S; da Silva, Edaise M; Noronha, Anne Marie; Mandelker, Diana L; Mehine, Miika; Mukherjee, Semanti; Blanco-Heredia, Juan; Orgera, John J; Nanjangud, Gouri J; Baine, Marina K; Aly, Rania G; Sauter, Jennifer L; Travis, William D; Savari, Omid; Moreira, Andre L; Falcon, Christina J; Bodd, Francis M; Wilson, Christina E; Sienty, Jacklynn V; Manoj, Parvathy; Sridhar, Harsha; Wang, Lu; Choudhury, Noura J; Offin, Michael; Yu, Helena A; Quintanal-Villalonga, Alvaro; Berger, Michael F; Ladanyi, Marc; Donoghue, Mark T A; Reis-Filho, Jorge S; Rudin, Charles M

Cancer discovery. 2025 Jan 13; 15:83-104

IFN-γ-producing TH1 cells and dysfunctional regulatory T cells contribute to the pathogenesis of Sjögren's disease

Wang, Yin-Hu; Li, Wenyi; McDermott, Maxwell; Son, Ga-Yeon; Maiti, George; Zhou, Fang; Tao, Anthony Y; Raphael, Dimitrius; Moreira, Andre L; Shen, Boheng; Vaeth, Martin; Nadorp, Bettina; Chakravarti, Shukti; Lacruz, Rodrigo S; Feske, Stefan

Science translational medicine. 2024 Dec 18; 16:eado4856

Pulmonary Adenocarcinoma Updates: Histology, Cytology, and Grading

Sharma, Jake; Zhou, Fang; Moreira, Andre L

Archives of pathology & laboratory medicine. 2024 Dec 13;

Antiviral innate immune memory in alveolar macrophages following SARS-CoV-2 infection ameliorates secondary influenza A virus disease

Lercher, Alexander; Cheong, Jin-Gyu; Bale, Michael J; Jiang, Chenyang; Hoffmann, Hans-Heinrich; Ashbrook, Alison W; Lewy, Tyler; Yin, Yue S; Quirk, Corrine; DeGrace, Emma J; Chiriboga, Luis; Rosenberg, Brad R; Josefowicz, Steven Z; Rice, Charles M

Immunity. 2024 Nov 12; 57:2530-2546.e13