Center for Biospecimen Research & Development Featured Publications | NYU Langone Health

Center for Biospecimen Research & Development Center for Biospecimen Research & Development Featured Publications

Center for Biospecimen Research & Development Featured Publications

Our staff members and collaborators frequently publish their research in leading peer-reviewed publications. Here is a selection of their recent accomplishments.

Selected Publications

Diagnostic Category: Suspicious for Malignancy

Moreira, Andre L; Schmitt, Fernando

Cytopathology : official journal of the British Society for Clinical Cytology. 2025 Apr 26;

Enhancing Interstitial Lung Disease Diagnoses Through Multimodal AI Integration of Histopathological and CT Image Data

Lami, Kris; Ozasa, Mutsumi; Che, Xiangqian; Uegami, Wataru; Kato, Yoshihiro; Zaizen, Yoshiaki; Tsuyama, Naoko; Mori, Ichiro; Ichihara, Shin; Yoon, Han-Seung; Egashira, Ryoko; Kataoka, Kensuke; Johkoh, Takeshi; Kondo, Yasuhiro; Attanoos, Richard; Cavazza, Alberto; Marchevsky, Alberto M; Schneider, Frank; Augustyniak, Jaroslaw Wojciech; Almutrafi, Amna; Fabro, Alexandre Todorovic; Brcic, Luka; Roden, Anja C; Smith, Maxwell; Moreira, Andre; Fukuoka, Junya

Respirology (Carlton, Vic.). 2025 Apr 02;

Genomic and Transcriptomic Profiling of Digital Papillary Adenocarcinomas Reveals Alterations in Matrix Remodeling and Metabolic Genes

Bayraktar, Erol Can; Aung, Phyu P; Gill, Pavandeep; Shen, Guomiao; Vasudevaraja, Varshini; Lai, Zongshan; Chiriboga, Luis; Ivan, Doina; Nagarajan, Priyadharsini; Curry, Jonathan L; Torres-Cabala, Carlos A; Prieto, Victor G; Jour, George

Journal of cutaneous pathology. 2025 Apr ; 52:309-316

Characterizing Chronic Cutaneous Immune-Related Adverse Events Following Immune Checkpoint Inhibitors

Fletcher, Kylie A; Goodman, Rachel S; Lawless, Aleigha; Woodford, Rachel; Fa'ak, Faisal; Tipirneni, Asha; Patrinely, J Randall; Yeoh, Hui Ling; Rapisuwon, Suthee; Haydon, Andrew; Osman, Iman; Mehnert, Janice M; Long, Georgina V; Sullivan, Ryan J; Carlino, Matteo S; Menzies, Alexander M; Dewan, Anna K; Johnson, Douglas B

JAMA dermatology. 2025 Mar 12;

Characterization of tumour heterogeneity through segmentation-free representation learning on multiplexed imaging data

Tan, Jimin; Le, Hortense; Deng, Jiehui; Liu, Yingzhuo; Hao, Yuan; Hollenberg, Michelle; Liu, Wenke; Wang, Joshua M; Xia, Bo; Ramaswami, Sitharam; Mezzano, Valeria; Loomis, Cynthia; Murrell, Nina; Moreira, Andre L; Cho, Kyunghyun; Pass, Harvey I; Wong, Kwok-Kin; Ban, Yi; Neel, Benjamin G; Tsirigos, Aristotelis; Fenyö, David

Nature biomedical engineering. 2025 Mar ; 9:405-419

Deep learning-based classifier for carcinoma of unknown primary using methylation quantitative trait loci

Walker, Adam; Fang, Camila S; Schroff, Chanel; Serrano, Jonathan; Vasudevaraja, Varshini; Yang, Yiying; Belakhoua, Sarra; Faustin, Arline; William, Christopher M; Zagzag, David; Chiang, Sarah; Acosta, Andres Martin; Movahed-Ezazi, Misha; Park, Kyung; Moreira, Andre L; Darvishian, Farbod; Galbraith, Kristyn; Snuderl, Matija

Journal of neuropathology & experimental neurology. 2025 Feb 01; 84:147-154

Deep learning uncovers histological patterns of YAP1/TEAD activity related to disease aggressiveness in cancer patients

Schmauch, Benoit; Cabeli, Vincent; Domingues, Omar Darwiche; Le Douget, Jean-Eudes; Hardy, Alexandra; Belbahri, Reda; Maussion, Charles; Romagnoni, Alberto; Eckstein, Markus; Fuchs, Florian; Swalduz, Aurélie; Lantuejoul, Sylvie; Crochet, Hugo; Ghiringhelli, François; Derangere, Valentin; Truntzer, Caroline; Pass, Harvey; Moreira, Andre L; Chiriboga, Luis; Zheng, Yuanning; Ozawa, Michael; Howitt, Brooke E; Gevaert, Olivier; Girard, Nicolas; Rexhepaj, Elton; Valtingojer, Iris; Debussche, Laurent; de Rinaldis, Emanuele; Nestle, Frank; Spanakis, Emmanuel; Fantin, Valeria R; Durand, Eric Y; Classe, Marion; Von Loga, Katharina; Pronier, Elodie; Cesaroni, Matteo

iScience. 2025 Jan 17; 28:111638

Chromothripsis-Mediated Small Cell Lung Carcinoma

Rekhtman, Natasha; Tischfield, Sam E; Febres-Aldana, Christopher A; Lee, Jake June-Koo; Chang, Jason C; Herzberg, Benjamin O; Selenica, Pier; Woo, Hyung Jun; Vanderbilt, Chad M; Yang, Soo-Ryum; Xu, Fei; Bowman, Anita S; da Silva, Edaise M; Noronha, Anne Marie; Mandelker, Diana L; Mehine, Miika; Mukherjee, Semanti; Blanco-Heredia, Juan; Orgera, John J; Nanjangud, Gouri J; Baine, Marina K; Aly, Rania G; Sauter, Jennifer L; Travis, William D; Savari, Omid; Moreira, Andre L; Falcon, Christina J; Bodd, Francis M; Wilson, Christina E; Sienty, Jacklynn V; Manoj, Parvathy; Sridhar, Harsha; Wang, Lu; Choudhury, Noura J; Offin, Michael; Yu, Helena A; Quintanal-Villalonga, Alvaro; Berger, Michael F; Ladanyi, Marc; Donoghue, Mark T A; Reis-Filho, Jorge S; Rudin, Charles M

Cancer discovery. 2025 Jan 13; 15:83-104