COVID-19 Data Challenge Dataset
This dataset is a clinical snapshot of all patients who have had some type of COVID-19 related clinical activity at NYU Langone. All patients who have been tested for COVID-19, been diagnosed, or suspected of having COVID-19 are entered into the database, as well as much of these patients’ deidentified clinical data.
Obtain access to the dataset (Kerberos ID and password required for login).
View the data tables and read definitions below.
All patients who had a COVID-19 PCR or antibody test sent, a COVID-19 diagnosis documented, or a COVID-19 flag placed on the chart. Each record has a flag that shows if they had a COVID-19 PCR sent, had a positive PCR at any time, had a COVID-19 antibody test sent, had an antibody test that was positive at any time, had a COVID-19 diagnosis documented, and if they had a COVID-19 flag placed on the chart.
All ambulatory, telemedicine or inpatient encounters > January 1, 2020 for patients in the COVID-19 cohort. Dates are date shifted.
All diagnoses for patients in the COVID-19 cohort ever. Records obtained from: Problem List, Medical History, and inpatient coded Encounter Diagnoses. All dates are date shifted and all diagnoses prior to January 1, 2019 are flagged as being January 1, 2019.
All procedure orders for patients in the COVID-19 cohort order date > '1/1/2020'. Dates are shifted.
All lab results for patients in the COVID-19 cohort with a result date > '1/1/2020'. Dates are date shifted.
All medications ordered, prescribed, or documented by taking a history for patients in the COVID-19 cohort, documented > '1/1/2019'. Dates are shifted.
Medication administration record for inpatient encounters for patients in the cohort.
Observations made about patients in the cohort with observation date '1/1/2020'. Dates are shifted. Observations include: vital signs, height, weight, body mass index (BMI), method of oxygen supplementation, and others.
Observations related to ventilator utilization made about patients in the cohort with observation date '1/1/2020'. Dates are shifted. Vent observations include several ventilator settings including FIO2, plateau pressure, ventilator mode, etc.
All social history records documented in the chart for patients in the COVID-19 cohort.
All inpatient ADT (admission, discharge, and transfer) event records after 1/1/2020 for patients in the COVID-19 cohort. This table stores information about level of care and hospital service documentation during hospital admissions.