Experimental Pathology Research Laboratory Featured Publications

Our staff members and collaborators frequently publish their research in leading peer-reviewed publications. Here is a selection of their recent accomplishments.

Selected Publications

Characterization of tumour heterogeneity through segmentation-free representation learning on multiplexed imaging data

Tan, Jimin; Le, Hortense; Deng, Jiehui; Liu, Yingzhuo; Hao, Yuan; Hollenberg, Michelle; Liu, Wenke; Wang, Joshua M; Xia, Bo; Ramaswami, Sitharam; Mezzano, Valeria; Loomis, Cynthia; Murrell, Nina; Moreira, Andre L; Cho, Kyunghyun; Pass, Harvey I; Wong, Kwok-Kin; Ban, Yi; Neel, Benjamin G; Tsirigos, Aristotelis; Fenyö, David

Nature biomedical engineering. 2025 Mar ; 9:405-419

MetFinder: A Tool for Automated Quantitation of Metastatic Burden in Histological Sections From Preclinical Models

Karz, Alcida; Coudray, Nicolas; Bayraktar, Erol; Galbraith, Kristyn; Jour, George; Shadaloey, Arman Alberto Sorin; Eskow, Nicole; Rubanov, Andrey; Navarro, Maya; Moubarak, Rana; Baptiste, Gillian; Levinson, Grace; Mezzano, Valeria; Alu, Mark; Loomis, Cynthia; Lima, Daniel; Rubens, Adam; Jilaveanu, Lucia; Tsirigos, Aristotelis; Hernando, Eva

Pigment cell & melanoma research. 2025 Jan ; 38:e13195

Neuraminidase-mediated enhancement of Streptococcus pneumoniae colonization is associated with altered mucus characteristics and distribution

Montgomery, Matthew T; Ortigoza, Mila; Loomis, Cynthia; Weiser, Jeffrey N

MBio. 2024 Dec 11; e0257924

Digital spatial profiling to predict recurrence in grade 3 stage I lung adenocarcinoma

Chang, Stephanie H; Mezzano-Robinson, Valeria; Zhou, Hua; Moreira, Andre; Pillai, Raymond; Ramaswami, Sitharam; Loomis, Cynthia; Heguy, Adriana; Tsirigos, Aristotelis; Pass, Harvey I

Journal of thoracic & cardiovascular surgery. 2024 Sep ; 168:648-657.e8

Metabolic coordination between skin epithelium and type 17 immunity sustains chronic skin inflammation

Subudhi, Ipsita; Konieczny, Piotr; Prystupa, Aleksandr; Castillo, Rochelle L; Sze-Tu, Erica; Xing, Yue; Rosenblum, Daniel; Reznikov, Ilana; Sidhu, Ikjot; Loomis, Cynthia; Lu, Catherine P; Anandasabapathy, Niroshana; SuÃ¡rez-FariÃ±as, Mayte; Gudjonsson, Johann E; Tsirigos, Aristotelis; Scher, Jose U; Naik, Shruti

Immunity. 2024 Jul 09; 57:1665-1680.e7

Comparison of cardiac autonomic innervation in post-mortem tissue from individuals with kidney failure and preserved kidney function

Soomro, Qandeel; Mezzano, Valeria; Narula, Navneet; Rapkiewicz, Amy; Loomis, Cynthia; Charytan, David M

Clinical journal of the American Society of Nephrology : CJASN. 2024 Jun 13; 19:1319-22

Impaired upper respiratory tract barrier function during postnatal development predisposes to invasive pneumococcal disease

Lokken-Toyli, Kristen L; Aggarwal, Surya D; Bee, Gavyn Chern Wei; de Steenhuijsen Piters, Wouter A A; Wu, Cindy; Chen, Kenny Zhi Ming; Loomis, Cynthia; Bogaert, Debby; Weiser, Jeffrey N

PLoS pathogens. 2024 May ; 20:e1012111

Inhibiting influenza virus transmission using a broadly acting neuraminidase that targets host sialic acids in the upper respiratory tract

Ortigoza, Mila B; Mobini, Catherina L; Rocha, Hedy L; Bartlett, Stacey; Loomis, Cynthia A; Weiser, Jeffrey N

MBio. 2024 Feb 14; 15:e0220323

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Experimental Pathology Research Laboratory Featured Publications | NYU Langone Health