Genome Technology Center Featured Publications

Our staff members and collaborators frequently publish their research in leading peer-reviewed publications. Here is a selection of their recent accomplishments.

Selected Publications

Multi-omics analysis of a pig-to-human decedent kidney xenotransplant

Schmauch, Eloi; Piening, Brian D; Dowdell, Alexa K; Mohebnasab, Maedeh; Williams, Simon H; Stukalov, Alexey; Robinson, Fred L; Bombardi, Robin; Jaffe, Ian; Khalil, Karen; Kim, Jacqueline; Aljabban, Imad; Eitan, Tal; O'Brien, Darragh P; Rophina, Mercy; Wang, Chan; Bartlett, Alexandra Q; Zanoni, Francesca; Albay, Jon; Andrijevic, David; Maden, Berk; Mauduit, Vincent; Vikman, Susanna; Argibay, Diana; Zayas, Zasha; Wu, Leah; Moi, Kiana; Lau, Billy; Zhang, Weimin; Gragert, Loren; Weldon, Elaina; Gao, Hui; Hamilton, Lauren; Kagermazova, Larisa; Camellato, Brendan R; Gandla, Divya; Bhatt, Riyana; Gao, Sarah; Al-Ali, Rudaynah A; Habara, Alawi H; Chang, Andrew; Ferdosi, Shadi; Chen, Han M; Motter, Jennifer D; Chacon, Fiorella A; Thomas, Scott C; Saxena, Deepak; Fairchild, Robert L; Loupy, Alexandre; Heguy, Adriana; Crawford, Ali; Batzoglou, Serafim; Snyder, Michael P; Siddiqui, Asim; Holmes, Michael V; Chong, Anita S; Kaikkonen, Minna U; Linna-Kuosmanen, Suvi; Ayares, David; Lorber, Marc; Nellore, Anoma; Skolnik, Edward Y; Mattoo, Aprajita; Tatapudi, Vasishta S; Taft, Ryan; Mangiola, Massimo; Guo, Qian; Herati, Ramin S; Stern, Jeffrey; Griesemer, Adam; Kellis, Manolis; Boeke, Jef D; Montgomery, Robert A; Keating, Brendan J

Nature. 2025 Nov 13;

Aging, Rather than Genotype, Is the Principal Contributor to Differential Gene Expression Within Targeted Replacement APOE2, APOE3, and APOE4 Mouse Brain

Labuza, Amanda; Pidikiti, Harshitha; Alldred, Melissa J; Ibrahim, Kyrillos W; Peng, Katherine Y; Pasato, Jonathan; Heguy, Adriana; Mathews, Paul M; Ginsberg, Stephen D

Brain sciences. 2025 Oct 17; 15:

Evaluation of the gut microbiome and sex hormones in postmenopausal women with newly diagnosed hormone receptor-positive breast cancer versus healthy women: a prospective case-control study

Kwa, Maryann; Hussey, Grant; Novik, Yelena; Franke, Adrian A; Volkova, Angelina; Flores, Karina; Blaser, Martin J; Speyer, James; Oratz, Ruth; Meyers, Marleen; Jhaveri, Komal; Fadel, Ezeddin; Heguy, Adriana; Schluter, Jonas; Ruggles, Kelly V; Adams, Sylvia

Journal of cancer research and clinical oncology. 2025 Oct 04; 151:275

Benefits of Maternal Choline Supplementation on Aged Basal Forebrain Cholinergic Neurons (BFCNs) in a Mouse Model of Down Syndrome and Alzheimer's Disease

Alldred, Melissa J; Pidikiti, Harshitha; Ibrahim, Kyrillos W; Lee, Sang Han; Heguy, Adriana; Chiosis, Gabriela; Mufson, Elliott J; Stutzmann, Grace E; Ginsberg, Stephen D

Biomolecules. 2025 Aug 05; 15:

Frontal cortex pyramidal neuron expression profiles differentiate the prodromal stage from progressive degeneration across the Alzheimer's disease spectrum

Labuza, Amanda; Alldred, Melissa J; Pidikiti, Harshitha; Malek-Ahmadi, Michael H; Lee, Sang Han; Heguy, Adriana; Coleman, Paul D; Chakrabarty, Souparna; Chiosis, Gabriela; Mufson, Elliott J; Ginsberg, Stephen D

Alzheimer's & dementia. 2025 Jul ; 21:e70395

Profiling lamina specific pyramidal neurons using postmortem human formalin fixed paraffin embedded frontal cortex tissue in combination with digital spatial profiling

Stanisavljevic, Aleksandra; Ibrahim, Kyrillos W; Stavrides, Philip H; Bare, Christopher; Alldred, Melissa J; Heguy, Adriana; Nixon, Ralph A; Ginsberg, Stephen D

Journal of neuroscience methods. 2025 Jun 03; 110512

Profiling hippocampal neuronal populations reveals unique gene expression mosaics reflective of connectivity-based degeneration in the Ts65Dn mouse model of Down syndrome and Alzheimer's disease

Alldred, Melissa J; Ibrahim, Kyrillos W; Pidikiti, Harshitha; Lee, Sang Han; Heguy, Adriana; Chiosis, Gabriela; Mufson, Elliott J; Stutzmann, Grace E; Ginsberg, Stephen D

Frontiers in molecular neuroscience. 2025 Mar ; 18:1546375

Digital spatial profiling to predict recurrence in grade 3 stage I lung adenocarcinoma

Chang, Stephanie H; Mezzano-Robinson, Valeria; Zhou, Hua; Moreira, Andre; Pillai, Raymond; Ramaswami, Sitharam; Loomis, Cynthia; Heguy, Adriana; Tsirigos, Aristotelis; Pass, Harvey I

Journal of thoracic & cardiovascular surgery. 2024 Sep ; 168:648-657.e8

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Genome Technology Center Featured Publications | NYU Langone Health