Institute for Systems Genetics Faculty & Staff
The Institute for Systems Genetics comprises faculty and staff across multiple departments.
Administration
Our administrators lead a team of faculty, students, and investigators that collaborates with other research and clinical programs at NYU Langone Health and around the world.
Jef Boeke, PhD, Founding Director
Dr. Boeke is best known for his fundamental genetic and biochemical work on mechanisms of transposition in higher cells. He coined the term “retrotransposon.” He is a professor in the Department of Biochemistry and Molecular Pharmacology and a member of the National Academy of Sciences and the American Academy of Arts and Sciences. Learn more about Dr. Boeke.
Debbie Bemis, PhD, Executive Director
Dr. Bemis works with our director to set and operationalize the strategic plan for the institute, as well as oversees its administration. She has more than 20 years of experience in basic and translational research, scientific communications, and research administration. Contact Dr. Bemis at debra.bemis@nyulangone.org.
Nakisha Davis, MPA, Senior Program Coordinator
Ms. Davis oversees and coordinates administrative procedures, including special events, communications, the wellness initiative, and the faculty recruitment program. She holds a master's degree in public administration and joined us in November 2013. Contact Ms. Davis at nakisha.davis@nyulangone.org.
Julie Oaks, Administrative Manager
Ms. Oaks supports administrative procedures including human resources and compliance. She also oversees the grant application process and serves as a liaison between the institute and Sponsored Program Administration. Contact Ms. Oaks at julie.oaks@nyulangone.org.
Meghan O’Keefe, MS, Executive Assistant
Ms. O’Keefe primarily supports Dr. Boeke in his role as director of the institute and works closely with our administrative leadership on daily operations and special initiatives. She earned her MS in nonprofit management from the New School and an undergraduate degree from Muhlenberg College. Contact Ms. O’Keefe at meghan.o'keefe@nyulangone.org.
Teddy Shin, Senior Financial Analyst
Mr. Shin manages our financial ledgers, procurement, and reporting. Prior to joining the institute, he monitored and reported on postaward grant activities for the NYU Langone research finance department. He is a lifelong New Yorker and business professional who earned his bachelor’s degree in finance from Baruch College. Contact Mr. Shin at teddy.shin@nyulangone.org.
Core Faculty
Jef Boeke, PhD
Institute Founder and Director
Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: mechanism of retrotransposition in eukaryotes and redesigning and synthesizing entire eukaryotic chromosomes
Aravinda Chakravarti, PhD
Director, Center for Human Genetics and Genomics
Professor, Departments of Medicine and Neuroscience and Physiology
Research interests: molecular basis of human disease, gene regulatory networks, and human population genomics
Teresa Davoli, PhD
Assistant Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: understanding the causes and consequences of genomic instability (with a focus on aneuploidy) in cancer and cell physiology
Gilad Evrony, MD, PhD
Assistant Professor, Department of Pediatrics, Department of Neuroscience and Physiology, and the Center for Human Genetics and Genomics
Research interests: genetics of brain development, function, and disease; technology development for neuroscience; precision medicine
David Fenyö, PhD
Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: proteomic data analysis and developing methods and databases for protein identification, characterization, and quantitation using mass spectrometry–based technologies
Liam Holt, PhD
Associate Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: how mechanical compression and molecular crowding affect cell biology and drive diseases like cancer, aging, and neurodegeneration
Timothee Lionnet, PhD
Assistant Professor, Department of Cell biology
Research interests: understanding how gene expression works, focusing mainly on its first step, transcription—the synthesis of mRNA from a gene encoded in DNA
Matthew Maurano, PhD
Assistant Professor, Department of Pathology
Research interests: genomics of gene expression and genetics of human disease
Marcus Noyes, PhD
Assistant Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: characterization and manipulation of protein–ligand interactions
Kelly V. Ruggles, PhD
Assistant Professor, Division of Translational Medicine, Department of Medicine
Research interests: multi-omic data integration, data visualization, application and development of computational and statistical methods to analyze genomic, transcriptomic, translatomic, proteomic, metabolomic, and microbiome data to inform cancer, inflammation, and cardiovascular disease
Jonas Schluter, PhD
Assistant Professor, Department of Microbiology
Research interests: gut microbiome, massive clinical data sets and the hospitalome, microbial ecology and warfare, evolutionary theory, quorum sensing, machine-learning and Bayesian time series analysis, microbiota, cancer, immunity, and immunology
Itai Yanai, PhD
Professor, Department of Biochemistry and Molecular Pharmacology
Research interests: cancer, computational biology, developmental genetics, genomics, microbiome, systems biology, single-cell transcriptomics, gene expression atlas construction, and genome evolution
Affiliated Faculty
Thales Papagiannakopoulos, PhD
Assistant Professor, Department of Pathology
Neville Sanjana, PhD
Assistant Professor, NYU Department of Biology
Rahul Satija, DPhil
Assistant Professor, NYU Department of Biology
Beatrix Ueberheide, PhD
Assistant Professor, Department of Biochemistry and Molecular Pharmacology
Christine Vogel, PhD
Professor, NYU Department of Biology
Postdoctoral Fellows
Sana Badri, PhD—Ruggles Labs
Research interests: biomedical informatics education and transcriptional regulatory mechanisms in blood cancers
sana.badri@nyulangone.org
Amit Bhardwaj, PhD—Fenyö Lab
Research interests: generation and characterization of an encyclopedia of the secretome of murine and human adipocytes
amit.bhardwaj2@nyulangone.org
Joy Bianchi, PhD—Davoli Lab
Research interests: understanding the control of genome stability in health and disease and the impact of copy number alterations on cancer immune evasion
joy.bianchi@nyulangone.org
Martina Bonucci, PhD—Holt Lab
Research interests: investigating molecular crowding in neural cells and defining molecular crowding role in neurodegeneration
martina.bonucci@nyulangone.org
Lance Denes, PhD—Holt and Lionnet Labs
Research interests: investigating the interplay between cellular mechanics and gene expression
lance.denes@nyulangone.org
Ryan Fine, PhD—Chakravarti Lab
Research interests: effects of pathogenic non-coding genetic variation in human disease; genetic causes of variation in penetrance
ryan.fine@nyulangone.org
Makiha Fukuda, PhD—Boeke Lab
Research interests: synthesizing RNA-based chromosomes in yeast
makiha.fukuda@nyulangone.org
Gregory Goldberg, PhD—Noyes Lab
Research interests: engineering CRISPR-Cas systems to facilitate the remodeling of genomes and gene regulatory circuits
gregory.goldberg@nyulangone.org
Marta Gronska-Peski, PhD—Evrony Lab
Research interests: somatic mutation processes in the brain
marta.gronska-peski@nyulangone.org
Gururaj Rao Kidiyoor, PhD—Holt Lab
Research interest: investigating physiological and pathological role of nuclear crowding in normal and cancer cells
gururajrao.kidiyoor@nyulangone.org
Stephanie Lauer, PhD—Boeke Lab
Research interests: using synthetic genomes to understand evolutionary processes
stephanie.lauer@nyulangone.org
Luciana Lazar Stefanita, PhD—Boeke Lab
Research interests: structural plasticity of eukaryotic genomes
luciana.lazarstefanita@nyulangone.org
Feiyue Lu, PhD—Lionnet Lab
Research interests: in vivo live imaging of transcription regulation
feiyue.lu@nyulangone.org
Wilson McKerrow, PhD—Fenyö Lab
Research interests: bioinformatic analysis of transposable elements broadly and LINE-1 specifically
wilson.mckerrow@nyulangone.org
Teesta Naskar, PhD—Chakravarti Lab
Research interests: genetic predisposition of neurodevelopmental disorders in multiplex families
teesta.naskar@nyulangone.org
Gudjón Ólafsson, PhD—Boeke Lab
Research interests: using humanized yeast to uncover mechanisms of human chromosome segregation
gudjon.olafsson@nyulangone.org
Raquel Ordonez Ciriza, PhD—Maurano Lab
Research interests: deciphering genetic and epigenetic mechanisms that generate cellular identities and pathological phenotypes
raquel.ordonezciriza@nyulangone.org
Sudarshan Pinglay, PhD—Boeke Lab
Research interests: building biology from the ground up in order to understand function
sudarshan.pinglay@nyulangone.org
André M. Ribeiro dos Santos, PhD—Maurano Lab
Research interests: understanding the genomics of gene expression and human diseases through the development of bioinformatics tools and statistical analysis
andre.ribeirodossantos@nyulangone.org
Dajun Sang, PhD—Holt Lab
Research interests: using ancestral resurrection to understand kinase regulation and decode cancer mutations
dajun.sang@nyulangone.org
Shivanjali Saxena, PhD—Holt Lab
Research interests: investigating signaling pathways associated with the impact of pathological physical factors within glioblastoma microenvironment
shivanjali.saxena@nyulangone.org
Tong Shu, PhD—Holt Lab
Research interests: understanding the biophysical mechanisms of molecular crowding within cell influencing cellular processes
tong.shu@nyulangone.org
Peter Whitney, PhD—Lionnet Lab
Research interests: decoding the regulatory genome using high-resolution fluorescent microscopy
peter.whitney@nyulangone.org
Ying Xie, PhD—Holt Lab
Research interests: how cellular biophysical property and proteins are remodeled in quiescent cells
ying.xie@nyulangone.org
Or Yaacov, MD—Chakravarti Lab
Research interests: population genetics and genomics, large-scale biobanks, and electronic medical records research
or.yaacov@nyulangone.org
Weimin Zhang, PhD—Boeke Lab
Research interests: stabilizing and engineering the genome in haploid mouse embryonic stem cells
weimin.zhang@nyulangone.org
Xin Zhao, PhD—Davoli Lab
Research interests: somatic mutation and copy number alterations in cancer genomics
xin.zhao@nyulangone.org
Yu Zhao, PhD—Boeke Lab
Research interests: building the eukaryotic cells with synthetic genomes and engineering to understand biology
yu.zhao@nyulangone.org
Scientific Staff
Hannah Ashe—Maurano Lab
Assistant Research Technician
hannah.ashe@nyulangone.org
Maria Bahamon—Boeke Lab
Student Intern
maria.bahamon@nyulangone.org
Ran Brosh, PhD—Maurano Lab
Senior Research Scientist
ran.brosh@nyulangone.org
Ze Chen—Ruggles Lab
Research Associate
ze.chen@nyulangone.org
Finnegan Clark—Lionnet Lab
Research Associate
finnegan.clark@nyulangone.org
Camila Coelho—Boeke Lab
Assistant Research Technician
camila.coelho@nyulangone.org
Nicole Easo—Boeke Lab
Assistant Research Technician
nicole.easo@nyulangone.org
Gwen Ellis—Maurano Lab
Research Associate
gwen.ellis@nyulangone.org
Sergei German, MS
Senior Architect, Solution Development
sergei.german@nyulangone.org
Cindy Hernandez—Holt Lab
Assistant Research Technician
cindy.hernandez@nyulangone.org
Sarah Keegan—Fenyö Lab
Scientific Programmer
sarah.keegan@nyulangone.org
Manjunatha Kogenaru, PhD—Noyes Lab
Senior Research Scientist
manjunatha.kogenaru@nyulangone.org
Wenke Liu, PhD—Fenyö Lab
Research Scientist
wenke.liu@nyulangone.org
Sally Mei—Davoli Lab
Research Associate
sally.mei2@nyulangone.org
Angela Mermerian—Davoli Lab
Assistant Research Scientist
angela.mermerian@nyulangone.org
Nestor Saiz, PhD—Lionnet Lab
Research Scientist
nestor.saiz@nyulangone.org
Antonio Vela Gartner—Boeke Lab
Research Associate
antonio.velagartner@nyulangone.org
Yufeng Wang, PhD—Davoli Lab
Research Scientist
yufeng.wang@nyulangone.org
Aleksandra Wudzinska, MPhil—Boeke Lab
Lab Supervisor
aleksandra.wudzinska@nyulangone.org
Yinan (Florrie) Zhu—Boeke Lab
Research Associate
yinan.zhu@nyulangone.org
