Multi-Omics Study Design & Data Integration Resource Featured Publications

Faculty and staff of the Multi-Omics Study Design and Data Integration Resource publish frequently in peer-reviewed journals. Here is a selection of their recent publications.

Selected Publications

Microbial contribution to metabolic niche formation varies across the respiratory tract

Wong, Kendrew K; Wu, Benjamin G; Chung, Matthew; Li, Qinsheng; Darawshy, Fares; Tsay, Jun-Chieh J; Holub, Meredith; Barnett, Clea R; Kwok, Benjamin; Kugler, Matthias C; Chung, Cecilia; Natalini, Jake G; Singh, Shivani; Li, Yonghua; Schluger, Rosemary; Ficaro, Lia; Carpenito, Joseph; Collazo, Destiny; Perez, Luisanny; Kyeremateng, Yaa; Chang, Miao; Czachor, Anna; Singh, Raj; Mccormick, Colin; Campbell, Christina D; Keane, Ruaidhri; Askenazi, Manor; Hansbro, Philip M; Weiden, Michael D; Huang, Yvonne J; Stringer, Kathleen A; Clemente, Jose C; Li, Huilin; Jones, Drew; Ghedin, Elodie; Segal, Leopoldo N; Sulaiman, Imran

Cell host & microbe. 2025 Jun 24;

Association of tumor microbiome with survival in resected early-stage PDAC

Meng, Yixuan; Wang, Chan; Usyk, Mykhaylo; Kwak, Soyoung; Peng, Chengwei; Hu, Kenneth S; Oberstein, Paul E; Krogsgaard, Michelle; Li, Huilin; Hayes, Richard B; Ahn, Jiyoung

mSystems. 2025 Feb 27; e0122924

Culturally Tailored Social Media Intervention Improves Health Outcomes in Chinese Americans with Type 2 Diabetes: Preliminary Evidence from a Pilot RCT

Shi, Yun; Sevick, Mary Ann; Tang, Hao; Wang, Chan; Zhao, Yanan; Yoon, SeongHoon; Li, Huilin; Jiang, Yulin; Bai, Yujie; Ong, Iris H; Yang, Ximin; Su, Liwen; Levy, Natalie; Tamura, Kosuke; Hu, Lu

Journal of general internal medicine. 2025 Feb 27;

Sex differences in murine MASH induced by a fructose-palmitate-cholesterol-enriched diet

Arivazhagan, Lakshmi; Delbare, Sofie; Wilson, Robin A; Manigrasso, Michaele B; Zhou, Boyan; Ruiz, Henry H; Mangar, Kaamashri; Higa, Ryoko; Brown, Emily; Li, Huilin; Garabedian, Michael J; Ramasamy, Ravichandran; Moore, Kathryn J; Fisher, Edward A; Theise, Neil D; Schmidt, Ann Marie

JJHEP reports : innovation in hepatology. 2025 Feb ; 7:101222

The Integrating Cultural Aspects Into Diabetes Education (INCLUDE) Study to Prevent Diabetes in Chinese Immigrants: Protocol for a Randomized Controlled Trial

Hu, Lu; Lin, Nelson F; Shi, Yun; Cao, Jiepin; Sevick, Mary Ann; Li, Huilin; Beasley, Jeannette M; Levy, Natalie; Tamura, Kosuke; Xu, Xinyi; Jiang, Yulin; Ong, Iris; Yang, Ximin; Bai, Yujie; Su, Liwen; Chan, Sze Wan; Yi, Stella S

JMIR research protocols. 2024 Nov 19; 13:e65455

Lung microbial and host genomic signatures as predictors of prognosis in early-stage adenocarcinoma

Tsay, Jun-Chieh J; Darawshy, Fares; Wang, Chan; Kwok, Benjamin; Wong, Kendrew K; Wu, Benjamin G; Sulaiman, Imran; Zhou, Hua; Isaacs, Bradley; Kugler, Matthias C; Sanchez, Elizabeth; Bain, Alexander; Li, Yonghua; Schluger, Rosemary; Lukovnikova, Alena; Collazo, Destiny; Kyeremateng, Yaa; Pillai, Ray; Chang, Miao; Li, Qingsheng; Vanguri, Rami S; Becker, Anton S; Moore, William H; Thurston, George; Gordon, Terry; Moreira, Andre L; Goparaju, Chandra M; Sterman, Daniel H; Tsirigos, Aristotelis; Li, Huilin; Segal, Leopoldo N; Pass, Harvey I

Cancer epidemiology biomarkers & prevention. 2024 Nov 01; 33:1433-1444

Oral Microbiome and Subsequent Risk of Head and Neck Squamous Cell Cancer

Kwak, Soyoung; Wang, Chan; Usyk, Mykhaylo; Wu, Feng; Freedman, Neal D; Huang, Wen-Yi; McCullough, Marjorie L; Um, Caroline Y; Shrubsole, Martha J; Cai, Qiuyin; Li, Huilin; Ahn, Jiyoung; Hayes, Richard B

JAMA oncology. 2024 Nov 01; 10:1537-1547

Limited Evidence of Shared Decision Making for Prostate Cancer Screening in Audio-Recorded Primary Care Visits Among Black Men and their Healthcare Providers

Stevens, Elizabeth R; Thomas, Jerry; Martinez-Lopez, Natalia; Fagerlin, Angela; Ciprut, Shannon; Shedlin, Michele; Gold, Heather T; Li, Huilin; Davis, J Kelly; Campagna, Ada; Bhat, Sandeep; Warren, Rueben; Ubel, Peter; Ravenell, Joseph E; Makarov, Danil V

Journal of immigrant & minority health. 2024 Oct ; 26:866-877

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Multi-Omics Study Design & Data Integration Resource Featured Publications | NYU Langone Health